Project Need
Need For Project:
Mountainsnails (genus Oreohelix) are found in the mountainous regions of many western states. Of the terrestrial snails found in Utah, they are among the most conspicuous to the public; they are about the size of a quarter and their empty shells are often found on the side of hiking trails in the mountains. Most land snails are found in areas with persistent moisture, usually under logs, rocks, and leaf litter in forested areas. Mountainsnails are unique in that they are typically associated with arid environments. They are usually herbivores or ominvores, and vegetation (living and decaying) is a major food source (Hotopp et al. 2013). Along with playing a janitorial-type role in the forest environment, land snails help move calcium through forests. They obtain calcium from their food to build a strong shell, and other animals, such as birds, obtain the calcium they need by eating land snails (Hotopp et al.2013). Calcium is important to birds during the breeding season for egg shell development and skeletal growth of nestlings (Graveland and Drent 1997). Therefore, declining land snail populations may have a detrimental effect on the breeding success of some birds (Eeva and Lehikoinen 1995; Graveland and Drent 1997; Eeva et al. 2010). Like many other invertebrates with limited mobility and sensitivity to environmental perturbations, land snails are also important to humans as indicators of environmental quality (Regoli et al. 2006).
There are nine species of Mountainsnails present in Utah, and six of them are listed as Species of Greatest Conservation Need (SGCN) in the Utah Wildlife Action Plan (UWAP; UWAP 2015). Many of the historical localities for the six SGCN Mountainsnails were visited by UDWR biologists in recent years (2018-2021; ESMF project numbers 23, 62, 126 and 187), but these surveys were not exhaustive. New localities still need to be explored to better understand the current distribution, status, and threats for these Mountainsnails. However, a major hurdle toward a better understanding of these things is the inability to confidently identify individuals to species at new localities using shell and animal morphology.
Mountainsnails cannot be reliably identified to species using morphology alone (Linscott et al. 2020). Shell morphology can be highly variable within species and may vary depending on the local environment (e.g., rock type). Since using animal morphology tends to be less useful than shell morphology for identification of Mountainsnails, genetic sequencing is currently the most reliable way to identify Mountainsnails to species. However, the taxonomy of Mountainsnails is still in flux, and additional phylogenetic research using mitochondrial and genomic data is still needed (Linscott et al. 2020) to verify which Mountainsnails species are valid.
Taxonomic debate is as a crucial data gap in the Utah Wildlife Action Plan (UWAP; UWAP 2015); a clear understanding of taxonomy is fundamental to effective conservation of a species. Additional phylogenetic research may lead to the lumping of SGCN mountainanils or it may identify additional sensitive Mountainsnails species that need to be included on the Utah SGCN list. Either outcome will have major implications for effective conservation of Utah's Mountainsnails. Clarifying the taxonomy for Mountainsnails will also prevent inappropriate listing of species under the Endangered Species Act (see the recent example with the Kanab Ambersnail Oxyloma haydeni kanabensis, USFWS 2020).
It will be important to implement this two-year project by FY23 so that the findings can be used to update s-ranks for the revised UWAP in 2025. Additional surveys and phylogenetic research conducted through this project may suggest that the SGCN Mountainsnails populations are more stable than previously thought, leading to a higher (better) s-rank and removal from the SGCN list. Conversely, this study may find that they are more imperiled than previously thought. For example, a survey of 10 SGCN land snails in Idaho increased the average s-rank of the 10 species from 1.4 to 3.7 (Lucid et al. 2016). Either outcome will allow UDWR to better understand the current status of the SGCN Mountainsnails and move forward with appropriate conservation actions. Taking steps to prevent Mountainsnails from being listed under the Endangered Species Act will be important to reduce economic impacts to Utahns. Federally listing Mountainsnails could affect ski resorts, timber harvest, housing development, and mining, though the extent of the economic impact would depend on which Mountainsnails species are listed.
The goal of this project is to provide species-level identification of Mountainsnails at new localities and to refine Mountainsnail taxonomy using mitochondrial and genomic sequencing and phylogenetic analysis. Expected benefits of this project include:
* Genetically verified species-level identification for Mountainsnails from new localities.
* Clarify SGCN Mountainsnail species distribution, status, and threats.
* Project results are used to generate more accurate s-ranks for SGCN Mountainsnails, which will lead to better prioritization of mollusk conservation actions across Utah.
* A crucial data gap in the UWAP (taxonomic debate) is addressed.
* Objective 1 (clarify the number of species and delineate distributions for Mountainsnails) in the new UDWR Statewide Mollusk Strategy is addressed.
* Published project results in a peer-reviewed journal will provide a significant scientific contribution toward clarifying taxonomy for Mountainsnails.
* More data (but no verification of species using genetics) for other terrestrial SGCN snails that are also encountered during surveys. Other SGCN terrestrial snails that could be encountered include: Cross Snaggletooth (Gastrocopta quadridens), Mitered Vertigo (Vertigo concinnula), Montane Snaggletooth (Gastrocopta pilsbryana), Ribbed Dagger (Pupoides horaceus), Sluice Snaggletooth (Gastrocopta ashmuni), Striate Gem (Hawaiia neomexicana), Thin-lip Vallonia (Vallonia perspectiva), Top-heavy Column (Pupilla syngenes).
References
Eeva, T. and E. Lehikoinen. 1995. Egg shell quality, clutch size and hatching success of the great tit (Parus major) and the pied flycatcher (Ficedula hypoleuca) in an air pollution gradient. Oecologia 102: 312-323.
Eeva, T., K. Rainio, and O. Suominen. 2010. Effect of pollution on land snail abundance, size and diversity as a resources for pied flycatcher, Ficedula hypoleuca. Science of the Total Environment 408: 4165-4169.
Graveland, J. and R. H. Drent. 1997. Calcium availability limits breeding success of passerines on poor soils. Journal of Animal Ecology 66: 279-288.
Hotopp, K.P., T.A. Pearce, J.C. Nekola, J. Slapcinsky, D.C. Dourson, M. Winslow, G. Kimber, and B. Watson. 2013. Land snails and slugs of the Mid-Atlantic and northeastern United States. Carnegie Museum of Natural History, Pittsburgh, PA, USA. Online eesource: http://www.carnegiemnh.org/science/mollusks/index.html.
Linscott, M. T., K. Weaver, V. Morales, and C. Parent. 2020. Assessing species number and genetic diversity of the Mountainsnails (Oreohelicidae). Conservation Genetics 21: 971-985.
Lucid, M. K., Robinson, L., & Ehlers, S. (2016). Multi-species Baseline Initiative Project Report: 2010--2014. Idaho Department of Fish and Game. Coeur d'Alene, Idaho.
Regoli, F., S. Borbi, D. Fattorini, S. Tedesco, A. Notti, N. Machella, R. Bocchetti, M. Benedetti, and F. Piva. 2006. Use of the land snail Helix aspersa as sentinel organism for monitoring ecotoxicologic effects of urban pollution: and integrated approach. Environmental Health Perspectives 114: 63-69.
U.S. Fish and Wildlife Service [USFWS]. 2020. Endangered and threatened wildlife and plants; removing the Kanab Ambersnail from the list of endangered and threatened wildlife. Federal Register 86(119): 33137-33142.
Utah Wildlife Action Plan [UWAP]. 2015. Utah Wildlife Action Plan: a plan for managing native wildlife species and their habitats to help prevent listing under the Endangered Species Act. Publication number 15-14. Utah Division of Wildlife Resources, Salt Lake City, Utah, USA.
Objectives:
Year 1
1) Conduct terrestrial mollusk surveys across Utah, with a focus on possible new localities for SGCN Mountainsnail species.
2) Collect other (non-Mountainsnail) SGCN terrestrial snails encountered during surveys. Since collecting data on these snail species is not the primary focus of this project, these snails will be identified to family or genus level, and specimens will be preserved future species level confirmation using genetics.
3) Conduct preliminary laboratory work and analysis. This analysis will help refine survey efforts for year 2.
Year 2
4) Verify the species identity of the Mountainsnail specimens using mitochondrial and genomic sequencing techniques.
5) Conduct a phylogenetic analysis to clarify Mountainsnail taxonomy in Utah.
Project Location/Timing Justification (Why Here? Why Now?):
Not Applicable
Relation To Management Plan:
Relation to management plans
1) Utah Wildlife Action plan (UWAP) -- Taxonomic debate is one of the critical data gaps identified in this plan (UWAP 2015). Implementing this project will help clarify the taxonomy of Mountainsnails, which will have a multitude of benefits to the conservation of Mountainsnails (see list of expected benefits in the Needs section above).
2) UDWR Statewide Mollusk Conservation Strategy (Holcomb 2022) -- This proposed project will benefit all objectives of this Strategy since taxonomy is fundamental to conservation, but it will specifically address objective 1 (clarify the species number and boundaries for Mountainsnails).
Holcomb, K. In prep. Utah Division of Wildlife Resources Statewide Mollusk Conservation Strategy. Utah Division of Wildlife Resources, Salt Lake City, Utah.
Utah Wildlife Action Plan [UWAP]. 2015. Utah Wildlife Action Plan: a plan for managing native wildlife species and their habitats to help prevent listing under the Endangered Species Act. Publication number 15-14. Utah Division of Wildlife Resources, Salt Lake City, Utah, USA.
Fire / Fuels:
Not Applicable
Water Quality/Quantity:
Not Applicable
Compliance:
Selkirk Wildlife Science (https://www.selkirkwildlife.com/) personnel will conduct surveys and collect mollusk for genetic analysis. We will obtain a UDWR Certificate of Registration for collection of mollusks for the duration of the project. Selkirk Wildlife Science personnel may coordinate with UDWR biologists to gain access to surveys on private lands.
Methods:
Year 1
Selkirk Wildlife Science Personnel (Michael Lucid and technicians) will work with the UDWR to identify possible new localities for the six SGCN Mountainsnails across Utah. Surveys are expected to take place October-November 2022 and May-June in 2023 and will be conducted over the course of total of 40 field days. The survey protocol will follow those outlined in the UDWR Statewide Mollusk Conservation Strategy (Holcomb, in prep.). The following data will be collected for Mountainsnails and other SGCN terrestrial mollusks: date, survey coordinates, surveyors, survey effort, general habitat, species present (to the lowest taxonomic level possible), and number of snails observed. Surveyors will also make an assessment of the type and severity of threats present at each survey site. Some (1-10) Mountainsnails and other SGCN terrestrial mollusks from each site will be preserved for genetic analysis (non-Mountainsnails will be sequenced at a later date). All snails will be preserved in 90-100% non denatured ethanol (Holcomb, in prep.).
Some genetic sequencing may be conducted during the first year of the project, though the bulk of this work is anticipated in the second year of the project. Any genetic analysis done in year 1 will be preliminary and will help guide the analysis in year 2.
Year one product -- progress report that summarizes survey findings.
Year 2
Dr. T. Mason Linscott will conduct the mitochondrial and genomic genetic sequencing and phylogenetic analysis for the Mountainsnails. The phylogenetic analysis will expand on Dr. Linscott's previous research (Liscott et al. 2020) to further refine Mountainsnail taxonomy. Genomic data will be collected through sequencing a reduced representation of the entire genome through restriction-enzyme associated DNA sequencing (Rochette et al. 2019). Genomic analysis will first place Utah Oreohelix in a family-wide phylogenetic context using data from current genomic studies of Oreohelicidae (Linscott et al., in prep) and quartet, maximum likelihood, and bayesian coalescent approaches. Second, individuals of Utah Oreohelix will then be compared to their sister clades in BPP v.4.0 (Flouri et al. 2020), a framework for delimiting species using genetic data. The delimited units identified by BPP will then be examined for population structure within and between delimited units using STRUCTURE (Raj et al. 2014) to discover population and patterns of gene flow between populations.
Voucher snail specimens will be sent to the Natural History Museum of Utah's mollusk collection upon completion of the project.
Year 2 product -- Michael Lucid will write a final report with species-level identification of Mountainsnails from new locations. Michael Lucid and Mason Linscott will submit a publication to an appropriate scientific journal (e.g. Conservation Genetics).
References
Flouri, T., Jiao, X., Rannala, B., & Yang, Z. 2018. Species tree inference with BPP using genomic sequences and the multispecies coalescent. Molecular biology and evolution, 35(10), 2585-2593.
Holcomb, K. In prep. Utah Division of Wildlife Resources Statewide Mollusk Conservation Strategy. Utah Division of Wildlife Resources, Salt Lake City, Utah.
Linscott, M. T., K. Weaver, V. Morales, and C. Parent. 2020. Assessing species number and genetic diversity of the Mountainsnails (Oreohelicidae). Conservation Genetics 21: 971-985.
Raj, A., Stephens, M., & Pritchard, J. K. 2014. fastSTRUCTURE: variational inference of population structure in large SNP data sets. Genetics, 197(2), 573-589.
Rochette, N. C., & Catchen, J. M. 2017. Deriving genotypes from RAD-seq short-read data using Stacks. Nature Protocols, 12(12), 2640-2659.
Monitoring:
Monitoring species status and effectiveness monitoring (of a project) are not objectives of this two-year project. However, data generated from this project will be used to inform future mollusk monitoring efforts by UDWR.
Partners:
Dr. T. Mason Linscott (Virginia Polytechnic Institute and State Univerisity)
Kate Holcomb (Utah Division of Wildlife Resources)
Future Management:
This is a two-year project. Once completed, this project is expected to provide a multitude of benefits to the future conservation of SGCN Mountainsnails throughout Utah:
* Genetically verified species-level identification for Mountainsnails from new localities.
* Clarify SGCN Mountainsnail species distribution, status, and threats.
* Project results are used to generate more accurate s-ranks for SGCN Mountainsnails, which will lead to better prioritization of mollusk conservation actions across Utah.
* A crucial data gap in the UWAP (taxonomic debate) is addressed.
* Objective 1 (clarify the species number and boundaries for Mountainsnails) in the new UDWR Statewide Mollusk Strategy is addressed.
* Published project results in a peer-reviewed journal will provide a significant scientific contribution toward clarifying taxonomy for Mountainsnails.
This project will require two years for completion due to how the funding cycle aligns with the field season. The best time of year to collect Mountainsnails is in the spring (May-June in many parts of Utah); therefore, a second year of funding is needed for laboratory work, analysis, and communicating project results. Objectives and methods for year two are described above to provide context for how year one activities fit with year two activities to achieve the goal of this project (to provide species-level identification of Mountainsnails at new localities and to refine Mountainsnail taxonomy using mitochondrial and genomic sequencing and phylogenetic analysis). The second year of this project is expected to cost approximately $60,000.
Sustainable Uses of Natural Resources:
It will be important to implement this two-year project by FY23 so that the findings can be used to update s-ranks for the revised UWAP in 2025. Additional surveys and phylogenetic research conducted through this project may suggest that the SGCN Mountainsnails populations are more stable than previously thought, leading to a higher (better) s-rank and removal from the SGCN list. Conversely, this study may find that they are more imperiled than previously thought. For example, a survey of 10 SGCN land snails in Idaho increased the average s-rank of the 10 species from 1.4 to 3.7 (Lucid et al. 2016). Either outcome will allow UDWR to better understand the current status of the SGCN Mountainsnails and move forward with appropriate conservation actions. Taking steps to prevent Mountainsnails from being listed under the Endangered Species Act will be important to reduce economic impacts to Utahns. Federally listing Mountainsnails could affect ski resorts, timber harvest, housing development, and mining, though the extent of the economic impact would depend on which Mountainsnails species are listed.